25815 KH-I superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
25815 chr_23 KH-I superfamily 49838 53144 + KH-I superfamily

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0312

Most Highly Correlated Transcripts

12899

AAA
0.8759

264598

AAA
0.8751

34266

(RM17) rplQ
0.8456

269450

DEADc
0.8443

5496

hypothetical protein
0.842

22785

DUF336
0.841

13448

Sec1
0.8405

264556

FBPase
0.8404

261973

PKc_like superfamily
0.8377

25419

AP_muniscins_like_MHD
0.8372

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
KH-I K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide... cl17245 66.0443 2.40E-13 484 - 548 specific 238053
KH-I superfamily K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide... - 87.2993 4.50E-20 128 - 230 superfamily 266583
KH-I superfamily K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide... - 87.2993 4.50E-20 128 - 230 superfamily 266583

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_44729 PHATRDRAFT_44729 266989 67513 Not available Not available AT2G25970.1 339892

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003700 GO:0005622 GO:0006355 GO:0003676 -

GO:0003700

sequence-specific DNA binding transcription factor activity

Details: 
Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO Category: 
MF

GO:0005622

intracellular

Details: 
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO Category: 
CC

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

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