262862 rimM
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
262862 chr_6 rimM 968770 970046 - rimM

Synonyms

NCBI ID Ensembl Genomes exon ID
7442348 Thaps262862.2, Thaps262862.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0224

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0192
 0.36

Most Highly Correlated Transcripts

bd1667

(bd1667) Mpp10
0.9511

42152

WD40
0.9071

23210

hypothetical protein
0.9066

bd1709

(bd1709) NA
0.9044

26022

Pam16 superfamily
0.8973

23356

Gst
0.8938

267979

HCO3_cotransp superfamily
0.8917

bd1875

(bd1875) NA
0.8909

25365

hypothetical protein
0.8901

13308

PLN02948
0.886

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RimM superfamily RimM N-terminal domain; The RimM protein is essential for efficient processing of 16S rRNA. The... - 63.7088 7.13E-13 177 - 268 superfamily 250860
RimM superfamily RimM N-terminal domain; The RimM protein is essential for efficient processing of 16S rRNA. The... - 63.7088 7.13E-13 177 - 268 superfamily 250860
rimM 16S rRNA-processing protein RimM; Provisional - 129.877 8.60E-36 175 - 382 multi-dom 234650

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_43626 PHATRDRAFT_43626 160645 302622 104721 Cre03.g191950.t1.2 AT5G46420.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0006364 GO:0007046 -

GO:0006364

rRNA processing

Details: 
Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules.
GO Category: 
BP

GO:0007046

NA

Details: 
NA
GO Category: 
NA

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