261064 GAF
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
261064 chr_1 GAF 2110995 2113250 + GAF
NCBI ID Ensembl Genomes exon ID
7445485 Thaps261064.2, Thaps261064.1
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0317
(MYB22)
0.8689
YSH1
0.8583
COG3899
0.8476
hypothetical protein
0.8472
EEP superfamily
0.8402
CRM1
0.8351
Vac14_Fig4_bd
0.83
SMC_prok_B
0.829
hypothetical protein
0.8285
hypothetical protein
0.8279
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
GAF GAF domain; This domain is present in cGMP-specific phosphodiesterases, adenylyl and guanylyl... cl17456 67.9939 2.57E-13 621 - 746 specific 250726
GAF superfamily GAF domain; This domain is present in cGMP-specific phosphodiesterases, adenylyl and guanylyl... - 67.9939 2.57E-13 621 - 746 superfamily 266697
Lactamase_B superfamily Metallo-beta-lactamase superfamily; Metallo-beta-lactamase superfamily. - 62.4318 8.51E-11 104 - 408 superfamily 260426
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available 354736
KEGG description KEGG Pathway
Not available Not available
GO:0000156 GO:0000160 GO:0003677 GO:0006355 -

phosphorelay response regulator activity

Details: 
Responds to a phosphorelay sensor to initiate a change in cell state or activity. The activity of the response regulator is regulated by transfer of a phosphate from a histidine residue in the sensor, to an aspartate residue in the response regulator. Many but not all response regulators act as transcriptional regulators to elicit a response.
GO Category: 
MF

phosphorelay signal transduction system

Details: 
A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins.
GO Category: 
BP

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP
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