261064 GAF
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
261064 chr_1 GAF 2110995 2113250 + GAF

Synonyms

NCBI ID Ensembl Genomes exon ID
7445485 Thaps261064.2, Thaps261064.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0317

Most Highly Correlated Transcripts

262616

(MYB22)
0.8689

33033

YSH1
0.8583

263599

COG3899
0.8476

6075

hypothetical protein
0.8472

25669

EEP superfamily
0.8402

268616

CRM1
0.8351

12960

Vac14_Fig4_bd
0.83

2327

SMC_prok_B
0.829

5604

hypothetical protein
0.8285

24243

hypothetical protein
0.8279

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
GAF GAF domain; This domain is present in cGMP-specific phosphodiesterases, adenylyl and guanylyl... cl17456 67.9939 2.57E-13 621 - 746 specific 250726
GAF superfamily GAF domain; This domain is present in cGMP-specific phosphodiesterases, adenylyl and guanylyl... - 67.9939 2.57E-13 621 - 746 superfamily 266697
Lactamase_B superfamily Metallo-beta-lactamase superfamily; Metallo-beta-lactamase superfamily. - 62.4318 8.51E-11 104 - 408 superfamily 260426

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available 354736

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0000156 GO:0000160 GO:0003677 GO:0006355 -

GO:0000156

phosphorelay response regulator activity

Details: 
Responds to a phosphorelay sensor to initiate a change in cell state or activity. The activity of the response regulator is regulated by transfer of a phosphate from a histidine residue in the sensor, to an aspartate residue in the response regulator. Many but not all response regulators act as transcriptional regulators to elicit a response.
GO Category: 
MF

GO:0000160

phosphorelay signal transduction system

Details: 
A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins.
GO Category: 
BP

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

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