261747 PRK00142Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
261747	chr_3	PRK00142	761936	763401	-	PRK00142

Synonyms

NCBI ID	Ensembl Genomes exon ID
7444741	Thaps261747.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0271

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0151	0.31	0.00000000045 250

Most Highly Correlated Transcripts

bd621 (bd621) NA 0.9337	bd1945 (bd1945) NA 0.8475	bd74 (bd74) T6A_YgjD 0.8331	bd190 (bd190) SrmB 0.8299	bd96 (bd96) eIF-3_zeta 0.8287	8336 hypothetical protein 0.8064
12971 WD40 superfamily 0.7996	17657 HSR1_MMR1 0.7961	32736 DEADc 0.796	13254 DEADc 0.7916

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
RHOD superfamily		Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese...	-	121.147	3.51E-33	193 - 319	superfamily	260205
PRK00142		putative rhodanese-related sulfurtransferase; Provisional	-	209.704	4.41E-63	33 - 404	multi-dom	234663

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments