261781 (MutS) MutS
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
261781 chr_3 (MutS) MutS 943938 948567 - MutS

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0087

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0176
 0.34

Most Highly Correlated Transcripts

3787

DNA_pol_E_B
0.9375

bd624

(bd624) Glyco_transf_34 superfamily
0.9286

262526

MCM
0.9169

2085

hypothetical protein
0.9143

3158

HepA
0.9121

263366

Pkinase
0.9096

1622

AE_Prim_S
0.9062

bd529

(bd529) SNF2_N
0.8974

8536

CDC6
0.8852

bd439

(bd439) POLBc_alpha
0.884

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
MutS_V MutS domain V; This domain is found in proteins of the MutS family (DNA mismatch repair proteins)... cl17201 317.203 4.02E-99 1042 - 1300 specific 249899
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 317.203 4.02E-99 1042 - 1300 superfamily 266551
MutS_III MutS domain III; This domain is found in proteins of the MutS family (DNA mismatch repair proteins... cl17822 133.708 7.38E-34 693 - 1035 specific 253074
MutS_III superfamily MutS domain III; This domain is found in proteins of the MutS family (DNA mismatch repair proteins... - 133.708 7.38E-34 693 - 1035 superfamily 266862
MutS_I superfamily MutS domain I; This domain is found in proteins of the MutS family (DNA mismatch repair proteins)... - 125.38 5.94E-33 362 - 476 superfamily 250754
MutS_I superfamily MutS domain I; This domain is found in proteins of the MutS family (DNA mismatch repair proteins)... - 125.38 5.94E-33 362 - 476 superfamily 250754
MutS Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair] - 538.023 1.36E-172 359 - 1300 multi-dom 223327

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_53969 PHATRDRAFT_53969 212924 190397 253618 Cre05.g235750.t1.2 AT4G02070.1 353490

KEGG

KEGG description KEGG Pathway
Mismatch repair map03430

GO Terms

GO:0003684 GO:0005524 GO:0006298 GO:0006259 -

GO:0003684

damaged DNA binding

Details: 
Interacting selectively and non-covalently with damaged DNA.
GO Category: 
MF

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0006298

mismatch repair

Details: 
A system for the correction of errors in which an incorrect base, which cannot form hydrogen bonds with the corresponding base in the parent strand, is incorporated into the daughter strand. The mismatch repair system promotes genomic fidelity by repairing base-base mismatches, insertion-deletion loops and heterologies generated during DNA replication and recombination.
GO Category: 
BP

GO:0006259

DNA metabolic process

Details: 
Any cellular metabolic process involving deoxyribonucleic acid. This is one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides.
GO Category: 
BP

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