262266 (Tp_Myb1R9) SANT_TRF
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
262266 chr_4 (Tp_Myb1R9) SANT_TRF 1750648 1752487 - SANT_TRF

Synonyms

NCBI ID Ensembl Genomes exon ID
7443744 Thaps262266.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0270

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0041
 0.50

Most Highly Correlated Transcripts

bd1173

(bd1173) S_TKc
0.8783

bd439

(bd439) POLBc_alpha
0.8743

bd1983

(bd1983) RecA-like_NTPases superfamily
0.8602

bd1659

(bd1659) ZnMc_pappalysin_like
0.8475

40206

UAA
0.8451

bd1214

(bd1214) KISc_C_terminal
0.8415

31993

DUF3449
0.8409

34306

Thioredoxin_like superfamily
0.8366

264699

ATS1
0.836

11585

CDC27
0.8356

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SANT_TRF superfamily Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family; Human telomere... - 76.0667 4.83E-17 557 - 609 superfamily 212558
SANT_TRF superfamily Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family; Human telomere... - 76.0667 4.83E-17 557 - 609 superfamily 212558

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003677 GO:0005634 -

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

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