262313 Chloroa_b-bind superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
262313 chr_4 Chloroa_b-bind superfamily 2059568 2060377 + Chloroa_b-bind superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Thaps262313.1, Thaps262313.2, Thaps262313.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0022

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0224
 0.27

Most Highly Correlated Transcripts

4843

(FCP2) hypothetical protein
0.9917

32723

Chloroa_b-bind
0.9649

bd218

(bd218) Chloroa_b-bind superfamily
0.9437

bd1160

(bd1160) Chloroa_b-bind superfamily
0.9374

4882

(Lhcr4) fucoxanthin chl a/c light-harvesting protein
0.9368

2342

(Lhcr11) fucoxanthin chlorophyll a/c light-harvesting protein
0.9335

bd672

(bd672) NA
0.9328

25402

(Lhcf10) fucoxanthin chl a/c light-harvesting protein, major type
0.9323

3815

(Lhca6) Chloroa_b-bind
0.9303

7916

(FCP_2) Chloroa_b-bind superfamily
0.93

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Chloroa_b-bind superfamily Chlorophyll A-B binding protein; Chlorophyll A-B binding protein. - 89.0317 2.39E-22 1 - 150 superfamily 261492

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 269616 304074 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0009765 GO:0016020 GO:0004601 GO:0006979 -

GO:0009765

photosynthesis, light harvesting

Details: 
Absorption and transfer of the energy absorbed from light photons between photosystem reaction centers.
GO Category: 
BP

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

GO:0004601

peroxidase activity

Details: 
Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O.
GO Category: 
MF

GO:0006979

response to oxidative stress

Details: 
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
GO Category: 
BP

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