262433 Pumilio superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
262433 chr_5 Pumilio superfamily 456138 458279 - Pumilio superfamily

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0417

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0189
 0.32

Most Highly Correlated Transcripts

bd1934

(bd1934) NA
0.9393

41979

PRK06116
0.9112

bd1806

(bd1806) AAT_I superfamily
0.9094

bd643

(bd643) NA
0.8997

bd415

(bd415) arom_aa_hydroxylase superfamily
0.8939

269238

(Tp_HSF_1.3e) HSF_DNA-bind superfamily
0.8852

bd690

(bd690) NA
0.8805

268374

(PDHA1) TPP_E1_PDC_ADC_BCADC
0.8718

25330

hypothetical protein
0.8578

23623

hypothetical protein
0.8578

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Pumilio superfamily Pumilio-family RNA binding domain; Puf repeats (also labelled PUM-HD or Pumilio homology domain)... - 238.645 7.30E-73 264 - 535 superfamily 153420

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003723 GO:0016071 -

GO:0003723

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

GO:0016071

mRNA metabolic process

Details: 
The chemical reactions and pathways involving mRNA, messenger RNA, which is responsible for carrying the coded genetic 'message', transcribed from DNA, to sites of protein assembly at the ribosomes.
GO Category: 
BP

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