262819 TPRThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
262819	chr_6	TPR	756410	757068	-	TPR

Synonyms

NCBI ID	Ensembl Genomes exon ID
7443599	Thaps262819.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0204

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0140	0.29	0.25 0.43

Most Highly Correlated Transcripts

11575 hypothetical protein 0.9246	35401 COG0523 0.906	264556 FBPase 0.9039	4462 hypothetical protein 0.9006	13393 PLN02321 0.9002	6692 hypothetical protein 0.9002
261400 NA 0.8974	bd789 (bd789) ABC_ATPase superfamily 0.8909	40200 TRX_reduct 0.8885	35136 NA 0.8871

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
TPR superfamily		Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF...	-	62.0124	5.28E-13	36 - 133	superfamily	238112
TPR superfamily		Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF...	-	62.0124	5.28E-13	36 - 133	superfamily	238112

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_47492	PHATRDRAFT_47492	273150	326680	Not available	Not available	Not available	343583

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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