263062 SodA
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
263062 chr_7 SodA 207549 208789 + SodA

Synonyms

NCBI ID Ensembl Genomes exon ID
7446166 Thaps263062.3, Thaps263062.2, Thaps263062.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0028

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0244
 0.36

Most Highly Correlated Transcripts

bd1893

(bd1893) NA
0.9

14192

PLN02449
0.8922

261422

(MAP4) MetAP1
0.8906

36037

Trypsin_2
0.8858

35816

(GAPD2) PRK08955
0.8831

bd951

(bd951) NA
0.883

bd790

(bd790) ABCC_MRP_domain2
0.8825

6505

hypothetical protein
0.8801

33389

PKc_like superfamily
0.8792

17214

PLN02512
0.879

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Sod_Fe_C superfamily Iron/manganese superoxide dismutases, C-terminal domain; superoxide dismutases (SODs) catalyse the... - 154.756 1.13E-47 112 - 220 superfamily 251524
Sod_Fe_C superfamily Iron/manganese superoxide dismutases, C-terminal domain; superoxide dismutases (SODs) catalyse the... - 154.756 1.13E-47 112 - 220 superfamily 251524
Sod_Fe_N superfamily Iron/manganese superoxide dismutases, alpha-hairpin domain; superoxide dismutases (SODs) catalyse... - 100.439 3.82E-27 22 - 107 superfamily 249570
SodA Superoxide dismutase [Inorganic ion transport and metabolism] - 235.239 8.11E-78 20 - 224 multi-dom 223678

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Cre10.g436050.t1.2 AT5G51100.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004784 GO:0006801 GO:0046872 GO:0004785 GO:0008382 GO:0008383 GO:0016954 -

GO:0004784

superoxide dismutase activity

Details: 
Catalysis of the reaction: 2 superoxide + 2 H+ = O2 + hydrogen peroxide.
GO Category: 
MF

GO:0006801

superoxide metabolic process

Details: 
The chemical reactions and pathways involving superoxide, the superoxide anion O2- (superoxide free radical), or any compound containing this species.
GO Category: 
BP

GO:0046872

metal ion binding

Details: 
Interacting selectively and non-covalently with any metal ion.
GO Category: 
MF

GO:0004785

NA

Details: 
NA
GO Category: 
NA

GO:0008382

NA

Details: 
NA
GO Category: 
NA

GO:0008383

NA

Details: 
NA
GO Category: 
NA

GO:0016954

NA

Details: 
NA
GO Category: 
NA

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