263643 Tub superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
263643	chr_10	Tub superfamily	344812	346459	-	Tub superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7447047	Thaps263643.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0349

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0023	0.43

Most Highly Correlated Transcripts

23350 lectin_L-type 0.8785	518 PKc_like superfamily 0.8509	3321 SMC_prok_B 0.8438	6875 DUF4471 superfamily 0.8328	3659 hypothetical protein 0.8292	4630 hypothetical protein 0.8285
11743 hypothetical protein 0.8224	10989 hypothetical protein 0.8203	2066 hypothetical protein 0.7956	23848 (Tp_HSF_3.5a) HSF_DNA-bind superfamily 0.792

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Tub superfamily		Tub family; Tub family.	-	226.883	5.96E-70	294 - 542	superfamily	250412

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_54048	PHATRDRAFT_54048	160665	63015	198344	Cre12.g520650.t1.2	AT2G47900.2	319932

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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