264603 SEC14Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
264603	chr_19a_19	SEC14	536140	536733	-	SEC14

Synonyms

NCBI ID	Ensembl Genomes exon ID
7449950	Thaps264603.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0033

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0067	0.47	12 0.35

Most Highly Correlated Transcripts

36641 Aldolase_Class_I superfamily 0.8456	26991 GRX_GRXh_1_2_like 0.844	17214 PLN02512 0.8416	28125 PLN00203 0.8372	22673 NA 0.8349	36649 SufE superfamily 0.8314
261981 0.8308	36037 Trypsin_2 0.8283	268908 Trans_IPPS_HH 0.8282	36669 TPT 0.8267

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
SEC14		Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae...	cl15787	59.7062	6.37E-12	9 - 69	specific	238099
SEC14 superfamily		Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae...	-	59.7062	6.37E-12	9 - 69	superfamily	265785

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments