264824 IF-2B
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
264824 chr_22 IF-2B 559305 560594 - IF-2B

Synonyms

NCBI ID Ensembl Genomes exon ID
7442853 Thaps264824.3, Thaps264824.2, Thaps264824.1, Thaps264824.4

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0110

Most Highly Correlated Transcripts

36649

SufE superfamily
0.89

261882

Thioredoxin_like superfamily
0.8728

16075

tpt
0.8661

33466

Sm_multidrug_ex
0.854

36641

Aldolase_Class_I superfamily
0.8539

270222

0.8523

26991

GRX_GRXh_1_2_like
0.8515

5314

hypothetical protein
0.8509

261278

GRX_GRXh_1_2_like
0.8462

17214

PLN02512
0.843

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
IF-2B Initiation factor 2 subunit family; This family includes initiation factor 2B alpha, beta and delta... cl00348 236.035 6.05E-75 74 - 360 specific 250290
IF-2B superfamily Initiation factor 2 subunit family; This family includes initiation factor 2B alpha, beta and delta... - 236.035 6.05E-75 74 - 360 superfamily 260372

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_10674 PHATRDRAFT_10674 194526 296580 204651 Cre16.g687518.t1.1 AT1G72340.1 558142

KEGG

KEGG description KEGG Pathway
RNA transport map03013

GO Terms

GO:0003743 GO:0005525 GO:0005851 GO:0006413 -

GO:0003743

translation initiation factor activity

Details: 
Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide.
GO Category: 
MF

GO:0005525

GTP binding

Details: 
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO Category: 
MF

GO:0005851

eukaryotic translation initiation factor 2B complex

Details: 
A multisubunit guanine nucleotide exchange factor which catalyzes the exchange of GDP bound to initiation factor eIF2 for GTP, generating active eIF2-GTP. In humans, it is composed of five subunits, alpha, beta, delta, gamma and epsilon.
GO Category: 
CC

GO:0006413

translational initiation

Details: 
The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA.
GO Category: 
BP

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