2663 PLDc_Tdp1_2
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
2663 chr_2 PLDc_Tdp1_2 1547195 1549249 + PLDc_Tdp1_2
NCBI ID Ensembl Genomes exon ID
7446669 Thaps2663.1, Thaps2663.2
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0282
Normalized Mean Residue
Thaps_bicluster_0005
0.39
(bd1821) NA
0.8348
0.7846
(bd740) NA
0.7795
(bd1803) NA
0.7773
GRX_PICOT_like
0.7606
HCO3_cotransp superfamily
0.7482
AAA
0.7469
PLN02948
0.7355
COG2391
0.7221
SAICAR_synt_Sc
0.7201
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PLDc_Tdp1_2 Catalytic domain, repeat 2, of tyrosyl-DNA phosphodiesterase; Catalytic domain, repeat 2, of... cl15239 184.477 2.22E-54 318 - 534 specific 197222
PLDc_SF superfamily Catalytic domain of phospholipase D superfamily proteins; Catalytic domain of phospholipase D (PLD... - 184.477 2.22E-54 318 - 534 superfamily 265651
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATR_2432 PHATR_2432 256043 213863 Not available Cre01.g053200.t1.1 AT5G15170.1 505563
KEGG description KEGG Pathway
Not available Not available
GO:0005634 GO:0006281 GO:0008081 -

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

DNA repair

Details: 
The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
GO Category: 
BP

phosphoric diester hydrolase activity

Details: 
Catalysis of the hydrolysis of a phosphodiester to give a phosphomonoester and a free hydroxyl group.
GO Category: 
MF
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