267929 Skp1Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
267929	chr_1	Skp1	216583	217339	+	Skp1

Synonyms

NCBI ID	Ensembl Genomes exon ID
7445117	Thaps267929.2, Thaps267929.1, Thaps267929.3

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0214

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0274	0.39	0.0012 6

Most Highly Correlated Transcripts

2702 Pro_isomerase 0.8634	2578 hypothetical protein 0.8625	20405 GRX_GRXh_1_2_like 0.8532	35956 SIR2 superfamily 0.8505	2575 RIO superfamily 0.8499	2678 Rotamase 0.8467
4829 hypothetical protein 0.8422	28148 (NIT2) nit 0.8411	6032 Ubox 0.8367	23170 hypothetical protein 0.8363

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Skp1 superfamily		Skp1 family, dimerization domain; Skp1 family, dimerization domain.	-	87.9924	7.84E-23	103 - 178	superfamily	250639
Skp1 superfamily		Skp1 family, dimerization domain; Skp1 family, dimerization domain.	-	87.9924	7.84E-23	103 - 178	superfamily	250639

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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