268655 HDAC_classII_2Thalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
268655	chr_4	HDAC_classII_2	740722	743586	-	HDAC_classII_2

Synonyms

NCBI ID	Ensembl Genomes exon ID
7452641	Thaps268655.1, Thaps268655.5, Thaps268655.6, Thaps268655.3, Thaps268655.2, Thaps268655.4

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0242

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0286	0.31	0.00000006 32

Most Highly Correlated Transcripts

22302 Peptidase_C19 superfamily 0.9018	268136 COG1054 0.8994	267979 HCO3_cotransp superfamily 0.8986	21044 hypothetical protein 0.8851	25359 hypothetical protein 0.8821	23667 hypothetical protein 0.88
23144 hypothetical protein 0.88	23969 hypothetical protein 0.8787	12899 AAA 0.8782	263872 PRK14329 0.8763

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
HDAC_classII_2		Histone deacetylases and histone-like deacetylases, classII; This subfamily includes eukaryotic as...	cl17011	324.85	5.25E-106	284 - 535	specific	212541
Arginase_HDAC superfamily		Arginase-like and histone-like hydrolases; Arginase-like/histone-like hydrolase superfamily...	-	324.85	5.25E-106	284 - 535	superfamily	266496
ANK superfamily		ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of...	-	88.2094	1.55E-20	140 - 269	superfamily	238125
ANK superfamily		ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of...	-	88.2094	1.55E-20	140 - 269	superfamily	238125
ANK superfamily		ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of...	-	88.2094	1.55E-20	140 - 269	superfamily	238125
ANK superfamily		ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of...	-	88.2094	1.55E-20	140 - 269	superfamily	238125
Ank_2		Ankyrin repeats (3 copies); Ankyrin repeats (3 copies).	-	61.5031	1.55E-11	75 - 171	multi-dom	257303
Ank_2		Ankyrin repeats (3 copies); Ankyrin repeats (3 copies).	-	61.5031	1.55E-11	75 - 171	multi-dom	257303

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_4423	PHATRDRAFT_4423	206710	257624	447983	Cre11.g477800.t1.1	Not available	561066

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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