27557 3a01204
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
27557 chr_3 3a01204 1547768 1550288 + 3a01204

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0129

Most Highly Correlated Transcripts

240

AAT_I superfamily
0.8515

25364

BTB
0.8506

bd1842

(bd1842) NA
0.8408

39741

(APM3) AP-3_Mu3_Cterm
0.839

263866

AAK superfamily
0.8374

264610

Prolidase
0.8324

264670

Thioredoxin_like superfamily
0.8307

16114

PLN02350
0.8296

11307

ABC_ATPase superfamily
0.826

267979

HCO3_cotransp superfamily
0.825

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 238.325 6.62E-74 28 - 256 superfamily 266551
ABC2_membrane ABC-2 type transporter; ABC-2 type transporter. cl17235 142.011 6.04E-39 345 - 555 specific 250332
ABC2_membrane superfamily ABC-2 type transporter; ABC-2 type transporter. - 142.011 6.04E-39 345 - 555 superfamily 266576
3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]. - 417.14 1.83E-137 37 - 609 multi-dom 233207

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 137656 295043 442986 Cre07.g327800.t1.1 AT4G27420.1 255978

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005524 GO:0016887 GO:0000166 GO:0017111 -

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0016887

ATPase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
GO Category: 
MF

GO:0000166

nucleotide binding

Details: 
Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO Category: 
MF

GO:0017111

nucleoside-triphosphatase activity

Details: 
Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate.
GO Category: 
MF

Add comment

Log in to post comments