2856 TetR_N superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
2856	chr_2	TetR_N superfamily	2028484	2029705	-	TetR_N superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7452346	Thaps2856.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0045

Most Highly Correlated Transcripts

13393 PLN02321 0.9222	264556 FBPase 0.8865	36007 Aldolase_II superfamily 0.8785	6028 NA 0.8742	31222 Ribosomal_S15p_S13e 0.8741	260850 (KE4) Zip 0.8714
267979 HCO3_cotransp superfamily 0.8602	21004 TFIIF_beta superfamily 0.8578	4108 hypothetical protein 0.8553	35136 NA 0.8526

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
TetR_N superfamily		Bacterial regulatory proteins, tetR family; Bacterial regulatory proteins, tetR family.	-	80.0913	7.40E-18	86 - 305	superfamily	267735

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_35064	PHATRDRAFT_35064	Not available	Not available	Not available	Not available	AT1G19140.2	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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