29327 PcbC
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
29327 chr_9 PcbC 650752 652025 + PcbC

Synonyms

NCBI ID Ensembl Genomes exon ID
7448069 Thaps29327.1, Thaps29327.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0488

Most Highly Correlated Transcripts

bd1806

(bd1806) AAT_I superfamily
0.8756

bd643

(bd643) NA
0.8624

bd1934

(bd1934) NA
0.8466

bd1790

(bd1790) NA
0.8439

bd690

(bd690) NA
0.8384

267979

HCO3_cotransp superfamily
0.8381

263887

S_TKc
0.8378

803

Synaptobrevin
0.8377

bd1959

(bd1959) NA
0.8367

bd1787

(bd1787) GLTP
0.8262

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
2OG-FeII_Oxy superfamily 2OG-Fe(II) oxygenase superfamily; This family contains members of the 2-oxoglutarate (2OG) and Fe(... - 98.6358 5.72E-27 18 - 120 superfamily 251775
2OG-FeII_Oxy superfamily 2OG-Fe(II) oxygenase superfamily; This family contains members of the 2-oxoglutarate (2OG) and Fe(... - 98.6358 5.72E-27 18 - 120 superfamily 251775
PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] - 157.913 2.74E-47 2 - 138 multi-dom 226022

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005506 GO:0016216 GO:0017000 -

GO:0005506

iron ion binding

Details: 
Interacting selectively and non-covalently with iron (Fe) ions.
GO Category: 
MF

GO:0016216

isopenicillin-N synthase activity

Details: 
Catalysis of the reaction: N-[(5S)-5-amino-5-carboxypentanoyl]-L-cysteinyl-D-valine + O(2) = 2 H(2)O + isopenicillin N.
GO Category: 
MF

GO:0017000

antibiotic biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of an antibiotic, a substance produced by or derived from certain fungi, bacteria, and other organisms, that can destroy or inhibit the growth of other microorganisms.
GO Category: 
BP

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