29818 Uup
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
29818 chr_13 Uup 300728 303387 - Uup

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0246

Most Highly Correlated Transcripts

267979

HCO3_cotransp superfamily
0.8932

16114

PLN02350
0.8719

261481

FTO_NTD
0.8669

1856

hypothetical protein
0.8653

40200

TRX_reduct
0.8628

9695

Cupin_8 superfamily
0.8615

268443

SAICAR_synt_Sc
0.8608

263721

LMF1
0.8555

36007

Aldolase_II superfamily
0.8553

268817

hypothetical protein
0.8542

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ABCF_EF-3 ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a... cl17201 163.003 3.44E-47 69 - 295 specific 213188
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 163.003 3.44E-47 69 - 295 superfamily 266551
ABCF_EF-3 ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a... cl17201 163.003 3.44E-47 69 - 295 specific 213188
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 163.003 3.44E-47 69 - 295 superfamily 266551
ABC_tran_2 superfamily ABC transporter; This domain is related to pfam00005. - 95.3367 1.47E-23 289 - 367 superfamily 257346
ABC_tran_2 superfamily ABC transporter; This domain is related to pfam00005. - 95.3367 1.47E-23 289 - 367 superfamily 257346
Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction... - 525.278 0 67 - 597 multi-dom 223562

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATR_10367 PHATR_10367 205630 293991 430796 Cre11.g478128.t1.1 AT1G64550.1 532399

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005524 GO:0016887 GO:0000166 GO:0017111 -

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0016887

ATPase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
GO Category: 
MF

GO:0000166

nucleotide binding

Details: 
Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO Category: 
MF

GO:0017111

nucleoside-triphosphatase activity

Details: 
Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate.
GO Category: 
MF

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