3073 SRPBCC superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
3073	chr_3	SRPBCC superfamily	25629	26781	-	SRPBCC superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7442431	Thaps3073.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0039

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0090	0.39	0.0019 0.23

Most Highly Correlated Transcripts

40034 thrS 0.8681	268398 PRK04173 0.8636	38707 Aldolase_Class_I superfamily 0.8623	35136 NA 0.8614	261633 (CTS2) cysS 0.8602	28865 AarF 0.8501
41655 Chloroa_b-bind 0.8488	20452 (RK28) Ribosomal_L28 0.8432	42000 PRK05912 0.8405	27618 Ribosomal_L10 0.8368

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
SRPBCC superfamily		START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily; SRPBCC domains...	-	99.9979	1.93E-25	144 - 309	superfamily	265438

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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