31142 H15
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
31142 chr_1 H15 1489956 1490735 + H15

Synonyms

NCBI ID Ensembl Genomes exon ID
7445123 Thaps31142.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0088

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0033
 0.48

Most Highly Correlated Transcripts

bd668

(bd668) NA
0.9311

bd794

(bd794) NA
0.9145

bd1313

(bd1313) psbH
0.9113

bd1092

(bd1092) NA
0.9099

bd2073

(bd2073) psbB
0.8819

bd1720

(bd1720) ftsH
0.8792

bd1078

(bd1078) NA
0.8787

bd573

(bd573) petA
0.8768

bd1304

(bd1304) Ycf4
0.8749

bd1387

(bd1387) psbE
0.8746

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
H15 linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome,... cl00073 72.2687 1.42E-16 125 - 211 specific 238028
H15 superfamily linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome,... - 72.2687 1.42E-16 125 - 211 superfamily 260173
HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins.... cl00082 68.8085 1.65E-15 5 - 70 specific 238686
HMG-box superfamily High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and... - 68.8085 1.65E-15 5 - 70 superfamily 260179

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003677 GO:0006355 -

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

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