31564 LSm5
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
31564 chr_1 LSm5 2237869 2238153 + LSm5

Synonyms

NCBI ID Ensembl Genomes exon ID
7449023 Thaps31564.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0181

Most Highly Correlated Transcripts

33348

IGPD superfamily
0.9087

20763

CAF1
0.9053

36419

RabGAP-TBC
0.9036

268293

Lactamase_B superfamily
0.8986

35136

NA
0.8979

37962

LSm3
0.8966

37642

nascent-polypeptide-associated complex alpha polypeptide-like protein
0.8959

22722

DUF2012 superfamily
0.8942

32216

(RT5) rpsE_bact
0.893

40148

(UBC2) UBCc
0.8903

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
LSm5 Like-Sm protein 5; The eukaryotic LSm proteins (LSm2-8 or LSm1-7) assemble into a hetero-heptameric... cl00259 113.108 8.06E-34 5 - 83 specific 212479
Sm_like superfamily Sm and related proteins; The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form... - 113.108 8.06E-34 5 - 83 superfamily 260307

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATR_10583 PHATR_10583 228873 302366 75990 Not available AT5G48870.1 Not available

KEGG

KEGG description KEGG Pathway
Spliceosome map03040

GO Terms

GO:0005634 GO:0005732 GO:0006397 GO:0030529 -

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0005732

small nucleolar ribonucleoprotein complex

Details: 
A ribonucleoprotein complex that contains an RNA molecule of the small nucleolar RNA (snoRNA) family and associated proteins. Most are involved in a step of processing of rRNA: cleavage, 2'-O-methylation, or pseudouridylation. The majority, though not all, fall into one of two classes, box C/D type or box H/ACA type.
GO Category: 
CC

GO:0006397

mRNA processing

Details: 
Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
GO Category: 
BP

GO:0030529

ribonucleoprotein complex

Details: 
A macromolecular complex containing both protein and RNA molecules.
GO Category: 
CC

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