32314 LSm2
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
32314 chr_2 LSm2 1388021 1388371 + LSm2
NCBI ID Ensembl Genomes exon ID
7446638 Thaps32314.1
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0190
Normalized Mean Residue
Thaps_bicluster_0016
0.55
SAICAR_synt_Sc
0.9338
2-Hacid_dh_1
0.9288
hypothetical protein
0.9212
RimI
0.9118
Zn-ribbon_RPC11
0.8935
HD_3
0.8915
hypothetical protein
0.8782
hypothetical protein
0.8772
(RM11) Ribosomal_L11
0.8722
Hydrolase_4 superfamily
0.8715
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
LSm2 Like-Sm protein 2; The eukaryotic LSm proteins (LSm2-8 or LSm1-7) assemble into a hetero-heptameric... cl00259 171.618 2.77E-56 21 - 109 specific 212472
Sm_like superfamily Sm and related proteins; The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form... - 171.618 2.77E-56 21 - 109 superfamily 260307
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATR_10494 PHATR_10494 257753 191979 73680 Cre10.g441950.t1.2 AT1G03330.1 317573
KEGG description KEGG Pathway
Spliceosome map03040
GO:0005634 GO:0005732 GO:0006397 GO:0030529 -

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

small nucleolar ribonucleoprotein complex

Details: 
A ribonucleoprotein complex that contains an RNA molecule of the small nucleolar RNA (snoRNA) family and associated proteins. Most are involved in a step of processing of rRNA: cleavage, 2'-O-methylation, or pseudouridylation. The majority, though not all, fall into one of two classes, box C/D type or box H/ACA type.
GO Category: 
CC

mRNA processing

Details: 
Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
GO Category: 
BP

ribonucleoprotein complex

Details: 
A macromolecular complex containing both protein and RNA molecules.
GO Category: 
CC
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