33000 FTHFSThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
33000	chr_3	FTHFS	1340608	1342653	+	FTHFS

Synonyms

NCBI ID	Ensembl Genomes exon ID
7451268	Thaps33000.1, Thaps33000.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0023

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0225	0.26	0.0012 59000

Most Highly Correlated Transcripts

4819 Bestrophin superfamily 0.8879	34585 PLN02389 0.876	4820 Bestrophin superfamily 0.8754	21081 hypothetical protein 0.8714	3353 FMN_dh 0.8646	269147 NAD_binding_8 superfamily 0.8637
bd760 (bd760) ZnMc superfamily 0.8634	9352 LrgB superfamily 0.8626	261748 COG0523 0.8587	bd1758 (bd1758) NA 0.8483

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
FTHFS		Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via...	cl17203	845.284	0	34 - 636	specific	238266
Fer4_NifH superfamily		The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain....	-	845.284	0	34 - 636	superfamily	266552

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_49229	PHATRDRAFT_49229	187750	64298	462980	Cre13.g566000.t1.2	AT1G50480.1	333950

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0004329 GO:0005524 GO:0009396 -

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