33709 RRM_SF superfamilyThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
33709	chr_4	RRM_SF superfamily	1604446	1605290	+	RRM_SF superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7443712	Thaps33709.1, Thaps33709.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0043

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0132	0.41	2.4 2.2

Most Highly Correlated Transcripts

11612 AFD_class_I superfamily 0.8472	28441 eIF-3c_N superfamily 0.8307	17511 DUS_like_FMN 0.827	bd1515 (bd1515) Adenylsuccinate_lyase_2 0.8194	261357 NAD_binding_8 superfamily 0.8141	261777 MIF4G 0.8138
19913 ybbN 0.8088	25881 hypothetical protein 0.8028	32920 UPF0066 0.8008	34044 PA2G4-like 0.7976

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
RRM_SF superfamily		RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (...	-	93.4468	1.70E-24	136 - 212	superfamily	266524
COG0724		RNA-binding proteins (RRM domain) [General function prediction only]	-	74.213	4.80E-16	132 - 215	multi-dom	223796

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0003676 -

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