33717 PLN02856
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
33717 chr_4 PLN02856 1548525 1550858 + PLN02856

Synonyms

NCBI ID Ensembl Genomes exon ID
7448855 Thaps33717.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0104

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0152
 0.38

Most Highly Correlated Transcripts

bd1842

(bd1842) NA
0.9638

263866

AAK superfamily
0.9243

42646

PRK04342
0.9177

31052

S_TKc
0.9148

15417

AAA
0.9139

268652

ATG11 superfamily
0.9138

25325

hypothetical protein
0.911

1244

hypothetical protein
0.9063

13448

Sec1
0.9051

268640

Glyco_hydro_47
0.9046

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
GST_C_family superfamily C-terminal, alpha helical domain of the Glutathione S-transferase family; Glutathione S-transferase... - 130.779 2.50E-35 646 - 769 superfamily 261442
Thioredoxin_like superfamily Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold; The thioredoxin (TRX... - 107.271 1.22E-27 558 - 631 superfamily 260398
FAA_hydrolase_N superfamily Fumarylacetoacetase N-terminal; The N-terminal domain of fumarylacetoacetate hydrolase is... - 89.1649 6.74E-21 32 - 166 superfamily 255272
FAA_hydrolase_N superfamily Fumarylacetoacetase N-terminal; The N-terminal domain of fumarylacetoacetate hydrolase is... - 89.1649 6.74E-21 32 - 166 superfamily 255272
FAA_hydrolase Fumarylacetoacetate (FAA) hydrolase family; This family consists of fumarylacetoacetate (FAA)... cl11421 91.2182 1.04E-20 172 - 468 specific 250705
FAA_hydrolase superfamily Fumarylacetoacetate (FAA) hydrolase family; This family consists of fumarylacetoacetate (FAA)... - 91.2182 1.04E-20 172 - 468 superfamily 264359
PLN02856 fumarylacetoacetase - 725.715 0 12 - 533 multi-dom 215461
maiA maleylacetoacetate isomerase; Maleylacetoacetate isomerase is an enzyme of tyrosine and... - 225.666 2.77E-68 558 - 775 multi-dom 233333

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Metabolic pathways map01100

GO Terms

GO:0003824 GO:0005737 GO:0009072 GO:0016034 -

GO:0003824

catalytic activity

Details: 
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO Category: 
MF

GO:0005737

cytoplasm

Details: 
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO Category: 
CC

GO:0009072

aromatic amino acid family metabolic process

Details: 
The chemical reactions and pathways involving aromatic amino acid family, amino acids with aromatic ring (phenylalanine, tyrosine, tryptophan).
GO Category: 
BP

GO:0016034

maleylacetoacetate isomerase activity

Details: 
Catalysis of the reaction: 4-maleylacetoacetate = 4-fumarylacetoacetate.
GO Category: 
MF

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