34186 SPC12
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
34186 chr_5 SPC12 288698 288944 - SPC12

Synonyms

NCBI ID Ensembl Genomes exon ID
7449652 Thaps34186.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0290

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0004
 0.42

Most Highly Correlated Transcripts

bd258

(bd258) HU
0.8944

268443

SAICAR_synt_Sc
0.879

37118

FeThRed_B
0.856

12899

AAA
0.8515

2184

hypothetical protein
0.8502

2890

hypothetical protein
0.8499

7827

hypothetical protein
0.8496

34266

(RM17) rplQ
0.8495

21044

hypothetical protein
0.8392

263565

RNAP_I_III_AC19
0.8386

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SPC12 superfamily Microsomal signal peptidase 12 kDa subunit (SPC12); This family consists of several microsomal... - 94.2343 1.07E-26 1 - 74 superfamily 253840
SPC12 superfamily Microsomal signal peptidase 12 kDa subunit (SPC12); This family consists of several microsomal... - 94.2343 1.07E-26 1 - 74 superfamily 253840

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_13921 PHATRDRAFT_13921 227407 304080 49768 Not available AT4G40042.1 495967

KEGG

KEGG description KEGG Pathway
Protein export map03060

GO Terms

GO:0005787 GO:0005792 GO:0006465 GO:0009003 GO:0016021 GO:0008233 GO:0008234 -

GO:0005787

signal peptidase complex

Details: 
A protein complex that is located in the endoplasmic reticulum membrane and cleaves the signal sequence from precursor proteins following their transport out of the cytoplasmic space.
GO Category: 
CC

GO:0005792

NA

Details: 
NA
GO Category: 
NA

GO:0006465

signal peptide processing

Details: 
The proteolytic removal of a signal peptide from a protein during or after transport to a specific location in the cell.
GO Category: 
BP

GO:0009003

NA

Details: 
NA
GO Category: 
NA

GO:0016021

integral component of membrane

Details: 
The component of a membrane consisting of gene products and protein complexes that have some part that penetrates at least one leaflet of the membrane bilayer. This component includes gene products that are buried in the bilayer with no exposure outside the bilayer.
GO Category: 
CC

GO:0008233

peptidase activity

Details: 
Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
GO Category: 
MF

GO:0008234

cysteine-type peptidase activity

Details: 
Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile.
GO Category: 
MF

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