3435 RotamaseThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
3435	chr_3	Rotamase	960170	960670	+	Rotamase

Synonyms

NCBI ID	Ensembl Genomes exon ID
7451652	Thaps3435.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0029

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0104	0.31	0.00019 10

Most Highly Correlated Transcripts

38608 SDR_a5 0.917	261608 PLN02585 0.9163	7442 hypothetical protein 0.9096	bd1403 (bd1403) NA 0.906	25787 hypothetical protein 0.9031	31169 PRX_BCP 0.9015
38306 Chloroa_b-bind 0.9	270378 hypothetical protein 0.896	3326 TauD 0.8922	6802 hypothetical protein 0.8921

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Rotamase		PPIC-type PPIASE domain; Rotamases increase the rate of protein folding by catalyzing the...	cl08278	91.1908	4.89E-24	75 - 158	specific	250020
Rotamase_2 superfamily		PPIC-type PPIASE domain; PPIC-type PPIASE domain.	-	91.1908	4.89E-24	75 - 158	superfamily	263564

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_12294	PHATRDRAFT_12294	180616	301259	317566	Not available	AT1G26550.1	353613

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0016853 GO:0003755 GO:0004600 GO:0030051 GO:0042027 -

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