34596 WD40
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
34596 chr_6 WD40 996172 999480 - WD40

Synonyms

NCBI ID Ensembl Genomes exon ID
7442354 Thaps34596.3, Thaps34596.2, Thaps34596.1, Thaps34596.4

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0230

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0179
 0.28

Most Highly Correlated Transcripts

22965

SrmB
0.9404

32395

RNA_pol
0.9306

21959

hypothetical protein
0.9305

13308

PLN02948
0.9295

21698

hypothetical protein
0.9288

8541

PRK00142
0.9277

20930

DRE_TIM_metallolyase superfamily
0.9272

22448

hypothetical protein
0.9266

24429

PRMT5 superfamily
0.9233

264345

SpoU
0.9225

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
WD40 superfamily WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions... - 102.413 1.37E-23 91 - 395 superfamily 238121
WD40 superfamily WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions... - 102.413 1.37E-23 91 - 395 superfamily 238121
WD40 superfamily WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions... - 102.413 1.37E-23 91 - 395 superfamily 238121
Utp12 superfamily Dip2/Utp12 Family; This domain is found at the C-terminus of proteins containing WD40 repeats.... - 85.7216 2.37E-19 916 - 1016 superfamily 252308
Utp12 superfamily Dip2/Utp12 Family; This domain is found at the C-terminus of proteins containing WD40 repeats.... - 85.7216 2.37E-19 916 - 1016 superfamily 252308
COG2319 FOG: WD40 repeat [General function prediction only] - 92.4591 8.82E-20 91 - 397 multi-dom 225201
COG2319 FOG: WD40 repeat [General function prediction only] - 92.4591 8.82E-20 91 - 397 multi-dom 225201

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_18258 PHATRDRAFT_18258 156423 252842 209137 Cre10.g438700.t1.1 AT3G21540.1 339653

KEGG

KEGG description KEGG Pathway
Ribosome biogenesis in eukaryotes map03008

GO Terms

GO:0003847 -

GO:0003847

1-alkyl-2-acetylglycerophosphocholine esterase activity

Details: 
Catalysis of the reaction: 2-acetyl-1-alkyl-sn-glycero-3-phosphocholine + H2O = 1-alkyl-sn-glycero-3-phosphocholine + acetate.
GO Category: 
MF

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