34698 Transcrip_regThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
34698	chr_6	Transcrip_reg	978803	979685	-	Transcrip_reg

Synonyms

NCBI ID	Ensembl Genomes exon ID
7442350	Thaps34698.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0039

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0125	0.41	0.0014 0.0015

Most Highly Correlated Transcripts

270222 0.9416	32053 PRK08661 0.8884	26191 asnC 0.8845	10081 MPP_PPP_family 0.8786	42000 PRK05912 0.8758	261882 Thioredoxin_like superfamily 0.8755
27618 Ribosomal_L10 0.8681	34093 COG1691 0.8664	21235 RpsA 0.8648	20024 FKBP_C 0.8622

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Transcrip_reg		Transcriptional regulator; This is a family of transcriptional regulators. In mammals, it activates...	cl00361	235.032	2.41E-76	55 - 291	specific	250810
Transcrip_reg superfamily		Transcriptional regulator; This is a family of transcriptional regulators. In mammals, it activates...	-	235.032	2.41E-76	55 - 291	superfamily	260382

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
268217	PHATRDRAFT_13791	PHATRDRAFT_13791	Not available	247528	65618	Cre02.g097550.t1.2	AT2G25830.1	518692

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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