36438 SSB_OBF
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
36438 chr_10 SSB_OBF 666006 666860 - SSB_OBF

Synonyms

NCBI ID Ensembl Genomes exon ID
7446865 Thaps36438.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0437

Most Highly Correlated Transcripts

32098

PTZ00063
0.8896

10270

hypothetical protein
0.8379

10788

Methyltransf_21
0.8251

262675

AAA
0.818

12836

EEP superfamily
0.8164

37240

LRR_9
0.8113

38473

Mob1_phocein superfamily
0.8108

41025

HDAC_classI
0.8107

34218

ER_lumen_recept superfamily
0.8101

4091

hypothetical protein
0.8068

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SSB_OBF SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind... cl09930 95.7569 7.72E-25 130 - 237 specific 239942
RPA_2b-aaRSs_OBF_like superfamily Replication protein A, class 2b aminoacyl-tRNA synthetases, and related proteins with... - 95.7569 7.72E-25 130 - 237 superfamily 263924
Ssb Single-stranded DNA-binding protein [DNA replication, recombination, and repair] - 84.8342 3.50E-20 127 - 234 multi-dom 223702

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_16725 PHATRDRAFT_16725 269886 167623 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003697 GO:0006260 -

GO:0003697

single-stranded DNA binding

Details: 
Interacting selectively and non-covalently with single-stranded DNA.
GO Category: 
MF

GO:0006260

DNA replication

Details: 
The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
GO Category: 
BP

Add comment

Log in to post comments