41025 HDAC_classI
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
41025 chr_6 HDAC_classI 896519 898040 - HDAC_classI

Synonyms

NCBI ID Ensembl Genomes exon ID
7442338 Thaps41025.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0458

Most Highly Correlated Transcripts

264556

FBPase
0.9318

13448

Sec1
0.9143

16295

FBPase
0.9077

2186

ERG4_ERG24 superfamily
0.9057

261400

NA
0.9025

264492

Peptidase_C1A
0.8999

20285

COG0694
0.8944

37970

Mito_carr
0.8919

12899

AAA
0.8909

13393

PLN02321
0.8905

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HDAC_classI Class I histone deacetylases; Class I histone deacetylases (HDACs) are Zn-dependent enzymes that... cl17011 637.318 0 30 - 335 specific 212517
Arginase_HDAC superfamily Arginase-like and histone-like hydrolases; Arginase-like/histone-like hydrolase superfamily... - 637.318 0 30 - 335 superfamily 266496

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_51026 PHATRDRAFT_51026 Not available 202833 453147 Not available Not available 311727

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004407 GO:0005634 GO:0016575 GO:0047611 -

GO:0004407

histone deacetylase activity

Details: 
Catalysis of the reaction: histone N6-acetyl-L-lysine + H2O = histone L-lysine + acetate. This reaction represents the removal of an acetyl group from a histone, a class of proteins complexed to DNA in chromatin and chromosomes.
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0016575

histone deacetylation

Details: 
The modification of histones by removal of acetyl groups.
GO Category: 
BP

GO:0047611

acetylspermidine deacetylase activity

Details: 
Catalysis of the reaction: N(8)-acetylspermidine + H(2)O = acetate + spermidine.
GO Category: 
MF

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