37231 HECTc
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
37231 chr_13 HECTc 570826 572524 + HECTc

Synonyms

NCBI ID Ensembl Genomes exon ID
7447829 Thaps37231.1, Thaps37231.3, Thaps37231.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0471

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0170
 0.34

Most Highly Correlated Transcripts

270222

0.9707

40200

TRX_reduct
0.9018

21437

SapB
0.8903

36995

LplA
0.888

bd945

(bd945) COG3899
0.8853

bd954

(bd954) NA
0.8853

19158

GRX_PICOT_like
0.8809

18392

RabGAP-TBC
0.8803

268443

SAICAR_synt_Sc
0.874

24519

hypothetical protein
0.8723

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HECTc HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds... cl00077 369.972 8.28E-125 108 - 458 specific 238033
HECTc superfamily HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds... - 369.972 8.28E-125 108 - 458 superfamily 260176
HECTc Domain Homologous to E6-AP Carboxyl Terminus with; E3 ubiquitin-protein ligases. Can bind to E2... - 324.187 3.14E-107 132 - 458 multi-dom 214523

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_14177 PHATRDRAFT_14177 192129 Not available 66918 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004842 GO:0005622 GO:0006464 GO:0006512 -

GO:0004842

ubiquitin-protein ligase activity

Details: 
Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine.
GO Category: 
MF

GO:0005622

intracellular

Details: 
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO Category: 
CC

GO:0006464

cellular protein modification process

Details: 
The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications) occurring at the level of an individual cell. Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification).
GO Category: 
BP

GO:0006512

NA

Details: 
NA
GO Category: 
NA

Add comment

Log in to post comments