38207 SecE superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
38207 chr_18 SecE superfamily 302989 303207 + SecE superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7444253 Thaps38207.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0426

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0096
 0.39

Most Highly Correlated Transcripts

37430

Sm_D2
0.8189

12899

AAA
0.8158

24110

hypothetical protein
0.8118

bd1875

(bd1875) NA
0.8116

37240

LRR_9
0.8116

bd196

(bd196) Snf7 superfamily
0.7952

5013

hypothetical protein
0.789

23584

KOW_RPL26
0.7861

34186

SPC12
0.7857

bd933

(bd933) NA
0.7784

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SecE superfamily SecE/Sec61-gamma subunits of protein translocation complex; SecE is part of the SecYEG complex in... - 91.3129 1.48E-25 11 - 71 superfamily 260453

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_17885 PHATRDRAFT_17885 272191 247906 225045 Cre16.g680230.t1.1 AT5G50460.1 532775

KEGG

KEGG description KEGG Pathway
Phagosome map04145

GO Terms

GO:0006605 GO:0006886 GO:0016020 GO:0015031 GO:0015450 -

GO:0006605

protein targeting

Details: 
The process of targeting specific proteins to particular membrane-bounded subcellular organelles. Usually requires an organelle specific protein sequence motif.
GO Category: 
BP

GO:0006886

intracellular protein transport

Details: 
The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
GO Category: 
BP

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

GO:0015031

protein transport

Details: 
The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0015450

P-P-bond-hydrolysis-driven protein transmembrane transporter activity

Details: 
Primary active carrier-mediated transport of a protein across a membrane, driven by the hydrolysis of the diphosphate bond of inorganic pyrophosphate, ATP, or another nucleoside triphosphate. The transport protein may or may not be transiently phosphorylated, but the substrate is not phosphorylated.
GO Category: 
MF

Add comment

Log in to post comments