38248 (ALATS1) PLN02900
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
38248 chr_19a_19 (ALATS1) PLN02900 256152 259448 + PLN02900

Synonyms

NCBI ID Ensembl Genomes exon ID
7446291 Thaps38248.3, Thaps38248.2, Thaps38248.4, Thaps38248.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0041

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0236
 0.32

Most Highly Correlated Transcripts

6610

hypothetical protein
0.9267

4138

hypothetical protein
0.9089

ThpsCp134

(rpl34) ribosomal protein L34
0.897

268398

PRK04173
0.8923

37277

tig
0.8901

23462

hypothetical protein
0.8795

21858

PRK11819
0.8727

ThpsCp115

(rps13) ribosomal protein S13
0.8654

21419

hypothetical protein
0.865

ThpsCp103

(rpl16) ribosomal protein L16
0.8617

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain. AlaRS is a homodimer. It is... cl00268 393.649 1.39E-129 63 - 309 specific 238360
class_II_aaRS-like_core superfamily Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA... - 393.649 1.39E-129 63 - 309 superfamily 260313
tRNA_SAD superfamily Threonyl and Alanyl tRNA synthetase second additional domain; The catalytically active from of... - 79.7417 1.45E-16 579 - 785 superfamily 263673
PLN02900 alanyl-tRNA synthetase - 1457.15 0 51 - 987 multi-dom 215487

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_15186 PHATRDRAFT_15186 206558 222122 462569 Cre02.g143200.t1.1 Not available Not available

KEGG

KEGG description KEGG Pathway
Aminoacyl-tRNA biosynthesis map00970

GO Terms

GO:0004813 GO:0005524 GO:0006419 GO:0003676 -

GO:0004813

alanine-tRNA ligase activity

Details: 
Catalysis of the reaction: ATP + L-alanine + tRNA(Ala) = AMP + diphosphate + L-alanyl-tRNA(Ala).
GO Category: 
MF

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0006419

alanyl-tRNA aminoacylation

Details: 
The process of coupling alanine to alanyl-tRNA, catalyzed by alanyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.
GO Category: 
BP

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

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