3848 BKR_SDR_c
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
3848 chr_3 BKR_SDR_c 1946434 1947512 + BKR_SDR_c

Synonyms

NCBI ID Ensembl Genomes exon ID
7445362 Thaps3848.1, Thaps3848.3, Thaps3848.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0490

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0145
 0.29

Most Highly Correlated Transcripts

bd1807

(bd1807) RRS1 superfamily
0.835

bd524

(bd524) NA
0.7818

bd1447

(bd1447) rps6
0.7565

bd74

(bd74) T6A_YgjD
0.7526

bd381

(bd381) NA
0.7487

bd686

(bd686) Glyco_transf_22 superfamily
0.7468

bd1439

(bd1439) ycf35
0.7421

262692

0.7406

270222

0.7377

bd621

(bd621) NA
0.7294

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
BKR_SDR_c beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs; This... cl09931 337.212 3.45E-116 47 - 288 specific 187594
NADB_Rossmann superfamily Rossmann-fold NAD(P)(+)-binding proteins; A large family of proteins that share a Rossmann-fold NAD... - 337.212 3.45E-116 47 - 288 superfamily 263925
fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated - 322.914 1.83E-110 47 - 292 multi-dom 235500

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available 563110

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0008152 GO:0016491 GO:0004316 -

GO:0008152

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

GO:0016491

oxidoreductase activity

Details: 
Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
MF

GO:0004316

3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity

Details: 
Catalysis of the reaction: (3R)-3-hydroxyacyl-[acyl-carrier protein] + NADP+ = 3-oxoacyl-[acyl-carrier protein] + NADPH + H+.
GO Category: 
MF

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