38672 Rab
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
38672 chr_22 Rab 888505 889394 + Rab

Synonyms

NCBI ID Ensembl Genomes exon ID
7448236 Thaps38672.2, Thaps38672.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0463

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0050
 0.45

Most Highly Correlated Transcripts

25111

HA
0.8191

36490

(APS2) APS2
0.7971

10037

hypothetical protein
0.7906

bd196

(bd196) Snf7 superfamily
0.7842

263766

SBF superfamily
0.7842

14971

DSPn
0.784

10934

Adenylation_DNA_ligase_like superfamily
0.7817

23391

(DES11) Delta6-FADS-like
0.7804

22180

hypothetical protein
0.7734

3600

Bromodomain superfamily
0.7714

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Rab Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases); Rab GTPases form... cl17170 241.976 1.10E-80 35 - 193 specific 206640
Ras_like_GTPase superfamily Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase... - 241.976 1.10E-80 35 - 193 superfamily 266525
PLN03110 Rab GTPase; Provisional - 155.087 3.97E-46 33 - 250 multi-dom 178657

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_bd998 PHATRDRAFT_bd998 210636 239333 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005525 GO:0007264 GO:0006886 GO:0015031 -

GO:0005525

GTP binding

Details: 
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO Category: 
MF

GO:0007264

small GTPase mediated signal transduction

Details: 
Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
GO Category: 
BP

GO:0006886

intracellular protein transport

Details: 
The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
GO Category: 
BP

GO:0015031

protein transport

Details: 
The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO Category: 
BP

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