39740 eIF-5_eIF-2B superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
39740 chr_2 eIF-5_eIF-2B superfamily 2522002 2523812 - eIF-5_eIF-2B superfamily

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0272

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0079
 0.38

Most Highly Correlated Transcripts

36007

Aldolase_II superfamily
0.8991

23242

PRK00142
0.8962

33670

RNRR2
0.8948

269925

AAA_12 superfamily
0.8924

268443

SAICAR_synt_Sc
0.8905

35164

acolac_lg
0.8834

267979

HCO3_cotransp superfamily
0.8827

23210

hypothetical protein
0.8822

38472

HA2
0.8805

8541

PRK00142
0.8804

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
W2_eIF5 C-terminal W2 domain of eukaryotic translation initiation factor 5; eIF5 functions as a GTPase... cl17013 120.799 1.44E-32 241 - 392 specific 211399
W2 superfamily C-terminal domain of eIF4-gamma/eIF5/eIF2b-epsilon; This domain is found at the C-terminus of... - 120.799 1.44E-32 241 - 392 superfamily 266498
eIF-5_eIF-2B superfamily Domain found in IF2B/IF5; This family includes the N terminus of eIF-5, and the C terminus of eIF-2... - 121.97 1.55E-33 21 - 131 superfamily 266499

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_47039 PHATRDRAFT_47039 170249 259313 469449 Cre06.g251600.t1.2 Not available 559899

KEGG

KEGG description KEGG Pathway
RNA transport map03013

GO Terms

GO:0003743 GO:0006413 GO:0006446 -

GO:0003743

translation initiation factor activity

Details: 
Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide.
GO Category: 
MF

GO:0006413

translational initiation

Details: 
The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA.
GO Category: 
BP

GO:0006446

regulation of translational initiation

Details: 
Any process that modulates the frequency, rate or extent of translational initiation.
GO Category: 
BP

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