40554 Uup
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
40554 chr_4 Uup 2387129 2389419 - Uup

Synonyms

NCBI ID Ensembl Genomes exon ID
7446712 Thaps40554.2, Thaps40554.3, Thaps40554.4, Thaps40554.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0042

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0029
 0.39

Most Highly Correlated Transcripts

bd1945

(bd1945) NA
0.8878

bd1807

(bd1807) RRS1 superfamily
0.8771

27873

PLN02274
0.8762

260833

Uup
0.8746

ThpsCp134

(rpl34) ribosomal protein L34
0.8732

bd190

(bd190) SrmB
0.8729

24750

hypothetical protein
0.8654

21858

PRK11819
0.8628

22879

hypothetical protein
0.8576

32325

ABC_ATPase superfamily
0.855

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ABCF_EF-3 ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a... cl17201 158.381 1.46E-45 11 - 250 specific 213188
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 158.381 1.46E-45 11 - 250 superfamily 266551
ABCF_EF-3 ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a... cl17201 158.381 1.46E-45 11 - 250 specific 213188
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 158.381 1.46E-45 11 - 250 superfamily 266551
ABC_tran_2 superfamily ABC transporter; This domain is related to pfam00005. - 71.0691 5.31E-15 245 - 331 superfamily 257346
ABC_tran_2 superfamily ABC transporter; This domain is related to pfam00005. - 71.0691 5.31E-15 245 - 331 superfamily 257346
Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction... - 566.879 0 11 - 552 multi-dom 223562

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_17043 PHATRDRAFT_17043 198218 247826 464368 Cre08.g372250.t1.2 AT5G64840.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005524 GO:0016887 GO:0000166 GO:0017111 -

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0016887

ATPase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
GO Category: 
MF

GO:0000166

nucleotide binding

Details: 
Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO Category: 
MF

GO:0017111

nucleoside-triphosphatase activity

Details: 
Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate.
GO Category: 
MF

Add comment

Log in to post comments