4224 PUB
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
4224 chr_4 PUB 501970 503497 + PUB

Synonyms

NCBI ID Ensembl Genomes exon ID
7447459 Thaps4224.2, Thaps4224.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0142

Most Highly Correlated Transcripts

2775

OAT_like
0.8878

3842

hypothetical protein
0.881

2409

MPN_NPL4
0.878

10059

hypothetical protein
0.8764

1762

PRA1 superfamily
0.8763

28148

(NIT2) nit
0.8749

10810

HP superfamily
0.8734

bd706

(bd706) NA
0.8725

2451

PH-like superfamily
0.8699

263810

PTZ00430
0.8696

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PUB PNGase/UBA or UBX (PUB) domain of p97 adaptor proteins; The PUB domain is found in p97 adaptor... cl15262 104.001 4.44E-27 133 - 229 specific 198416
PUB superfamily PNGase/UBA or UBX (PUB) domain of p97 adaptor proteins; The PUB domain is found in p97 adaptor... - 104.001 4.44E-27 133 - 229 superfamily 265658

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 252981 292305 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Protein processing in endoplasmic reticulum map04141

GO Terms

GO:0006464 -

GO:0006464

cellular protein modification process

Details: 
The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications) occurring at the level of an individual cell. Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification).
GO Category: 
BP

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