4334 PseudoU_synth_RluCD_like
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
4334 chr_4 PseudoU_synth_RluCD_like 776809 778566 + PseudoU_synth_RluCD_like

Synonyms

NCBI ID Ensembl Genomes exon ID
7447514 Thaps4334.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0034

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0010
 0.38

Most Highly Correlated Transcripts

bd1941

(bd1941) NA
0.9091

24705

hypothetical protein
0.8862

1588

hypothetical protein
0.8772

5153

hypothetical protein
0.8665

2126

hypothetical protein
0.864

bd1839

(bd1839) NA
0.8632

bd410

(bd410) HNHc
0.8625

22153

DnaJ
0.861

9571

(Tp_HSF_3.2i) HSF_DNA-bind
0.8583

24113

PRK02237
0.856

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PseudoU_synth_RluCD_like Pseudouridine synthase, RsuA/RluD family; This group is comprised of eukaryotic, bacterial and... cl00130 73.1405 5.37E-15 463 - 548 specific 211346
PseudoU_synth superfamily Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to... - 65.8217 1.28E-12 90 - 228 superfamily 260207
PseudoU_synth superfamily Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to... - 65.8217 1.28E-12 90 - 228 superfamily 260207

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_47695 PHATRDRAFT_47695 259035 294425 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003723 GO:0006396 GO:0009982 GO:0016439 -

GO:0003723

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

GO:0006396

RNA processing

Details: 
Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO Category: 
BP

GO:0009982

pseudouridine synthase activity

Details: 
Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5.
GO Category: 
MF

GO:0016439

NA

Details: 
NA
GO Category: 
NA

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