595 S1_IF1AThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
595	chr_7	S1_IF1A	1051392	1052076	+	S1_IF1A

Synonyms

NCBI ID	Ensembl Genomes exon ID
7447058	Thaps595.1, Thaps595.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0271

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0151	0.31	0.00000000045 250

Most Highly Correlated Transcripts

37083 PTZ00037 0.8813	22276 Gar1 0.8813	35164 acolac_lg 0.8803	21491 hypothetical protein 0.8727	22240 eRF1 0.872	42621 HisS 0.8662
34357 Fcf2 0.8644	27083 eIF3_N superfamily 0.8612	22334 hypothetical protein 0.858	27873 PLN02274 0.8578

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
S1_IF1A		S1_IF1A: Translation initiation factor IF1A, also referred to as eIF1A in eukaryotes and aIF1A in...	cl09927	131.107	4.31E-40	33 - 109	specific	240219
S1_like superfamily		S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated...	-	131.107	4.31E-40	33 - 109	superfamily	263921

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_8976	PHATRDRAFT_8976	271835	290720	68064	Cre02.g103550.t1.2	AT2G04520.1	354005

KEGG

KEGG description	KEGG Pathway
RNA transport	map03013

GO Terms

GO:0003743 GO:0006413 GO:0003723 -

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