6670 DUF1162 superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
6670	chr_7	DUF1162 superfamily	173049	189639	-	DUF1162 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7446605	Thaps6670.7, Thaps6670.2, Thaps6670.3, Thaps6670.6, Thaps6670.4, Thaps6670.5, Thaps6670.1, Thaps6670.9, Thaps6670.11, Thaps6670.10, Thaps6670.8

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0473

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0018	0.42

Most Highly Correlated Transcripts

24141 FH2 superfamily 0.8743	24604 hypothetical protein 0.8593	8542 RFC1 0.8576	9127 Smc 0.8547	263997 (APA1) Adaptin_N 0.8513	21568 hypothetical protein 0.848
24231 C2 superfamily 0.8476	23979 zf-HC5HC2H superfamily 0.8455	22442 CHD 0.8425	24753 C2 0.84

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
DUF1162 superfamily		Protein of unknown function (DUF1162); This family represents a conserved region within several...	-	78.4972	3.60E-15	4059 - 4231	superfamily	253843

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_47968	PHATRDRAFT_47968	243119	323294	433404	Not available	AT5G24740.1	554926

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0005515 -

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