8542 RFC1
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
8542 chr_10 RFC1 854263 858068 + RFC1
NCBI ID Ensembl Genomes exon ID
7450752 Thaps8542.2, Thaps8542.1
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0479
hypothetical protein
0.8686
FH2 superfamily
0.8648
HCO3_cotransp superfamily
0.8647
PTZ00121
0.8617
hypothetical protein
0.859
(APA1) Adaptin_N
0.8584
DUF1162 superfamily
0.8576
hypothetical protein
0.8549
Smc
0.8533
PLN02948
0.8513
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an... cl18944 78.3419 2.17E-16 672 - 812 specific 99707
AAA superfamily The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an... - 78.3419 2.17E-16 672 - 812 superfamily 267297
RFC1 superfamily Replication factor RFC1 C terminal domain; This is the C terminal domain of replication factor C,... - 129.251 7.58E-34 977 - 1137 superfamily 254850
RFC1 superfamily Replication factor RFC1 C terminal domain; This is the C terminal domain of replication factor C,... - 129.251 7.58E-34 977 - 1137 superfamily 254850
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATR_43994 PHATR_43994 212428 237322 467665 Cre12.g521200.t1.2 AT5G22010.1 304972
KEGG description KEGG Pathway
Mismatch repair map03430
GO:0003677 GO:0005663 GO:0006260 GO:0005622 GO:0000166 GO:0017111 GO:0005524 GO:0003911 -

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

DNA replication factor C complex

Details: 
A complex of five polypeptides in eukaryotes, and two in prokaryotes, that loads the DNA polymerase processivity factor proliferating cell nuclear antigen (PCNA) onto DNA, thereby permitting processive DNA synthesis catalyzed by DNA polymerase.
GO Category: 
CC

DNA replication

Details: 
The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
GO Category: 
BP

intracellular

Details: 
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO Category: 
CC

nucleotide binding

Details: 
Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO Category: 
MF

nucleoside-triphosphatase activity

Details: 
Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate.
GO Category: 
MF

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

DNA ligase (NAD+) activity

Details: 
Catalysis of the reaction: NAD+ + deoxyribonucleotide(n) + deoxyribonucleotide(m) = AMP + nicotinamide nucleotide + deoxyribonucleotide(n+m).
GO Category: 
MF
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