875 Trypsin_2
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
875 chr_1 Trypsin_2 43897 47773 + Trypsin_2

Synonyms

NCBI ID Ensembl Genomes exon ID
7446783 Thaps875.3, Thaps875.6, Thaps875.5, Thaps875.1, Thaps875.2, Thaps875.4

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0305

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0020
 0.47

Most Highly Correlated Transcripts

bd1948

(bd1948) NA
0.82

8258

CHD
0.8005

12899

AAA
0.7958

262616

(MYB22)
0.7951

262646

LRR_RI superfamily
0.783

8004

Phytase-like
0.7805

bd409

(bd409) Snf7 superfamily
0.7793

bd938

(bd938) PBP2_NikA_DppA_OppA_like superfamily
0.7762

23894

hypothetical protein
0.7749

40445

Dynein_heavy superfamily
0.7726

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Trypsin_2 Trypsin-like peptidase domain; This family includes trypsin like peptidase domains. cl19303 77.2833 3.56E-16 582 - 769 specific 257693
Trypsin_2 superfamily Trypsin-like peptidase domain; This family includes trypsin like peptidase domains. - 77.2833 3.56E-16 582 - 769 superfamily 267656

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available 232649 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004252 GO:0006508 -

GO:0004252

serine-type endopeptidase activity

Details: 
Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
GO Category: 
MF

GO:0006508

proteolysis

Details: 
The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO Category: 
BP

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