8964 LRR_RI superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
8964	chr_12	LRR_RI superfamily	178056	179441	+	LRR_RI superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7443244	Thaps8964.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0196

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0013	0.47	0.036 65

Most Highly Correlated Transcripts

263436 P4Hc 0.8896	261479 (Tp_E2F-DP1a_SET1a) DP superfamily 0.8727	22554 hypothetical protein 0.8695	4540 hypothetical protein 0.8682	6964 RING superfamily 0.8682	11614 ATP_bind_1 0.8677
269556 DEADc 0.8636	37118 FeThRed_B 0.8623	8084 hypothetical protein 0.8621	262960 TM_PBP1_branched-chain-AA_like superfamily 0.8572

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
LRR_RI superfamily		Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue...	-	72.3881	2.36E-14	152 - 334	superfamily	238064

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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