9195 rad50
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
9195 chr_12 rad50 814280 819376 - rad50

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0397

Most Highly Correlated Transcripts

4108

hypothetical protein
0.9988

263610

COG3899
0.92

263599

COG3899
0.9119

25600

hypothetical protein
0.9038

22333

hypothetical protein
0.9

20869

hypothetical protein
0.8995

23207

hypothetical protein
0.8891

3934

COG2319
0.8869

24063

COG3899
0.8856

8762

SNF2_N
0.8852

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ABC_Rad50 ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ATP-binding... cl17201 115.397 1.80E-28 4 - 168 specific 213207
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 115.397 1.80E-28 4 - 168 superfamily 266551
ABC_Rad50 ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ATP-binding... cl17201 115.397 1.80E-28 4 - 168 specific 213207
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 115.397 1.80E-28 4 - 168 superfamily 266551
rad50 rad50; All proteins in this family for which functions are known are involvedin recombination,... - 446.03 2.58E-133 2 - 1385 multi-dom 129694

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_51876 PHATRDRAFT_51876 199319 Not available 450484 Cre03.g192550.t1.1 AT2G31970.1 293155

KEGG

KEGG description KEGG Pathway
Non-homologous end-joining map03450

GO Terms

GO:0005524 GO:0016887 GO:0006281 GO:0030870 GO:0016817 -

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0016887

ATPase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
GO Category: 
MF

GO:0006281

DNA repair

Details: 
The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
GO Category: 
BP

GO:0030870

Mre11 complex

Details: 
Trimeric protein complex that possesses endonuclease activity; involved in meiotic recombination, DNA repair and checkpoint signaling. In Saccharomyces cerevisiae, the complex comprises Mre11p, Rad50p, and Xrs2p; complexes identified in other species generally contain proteins orthologous to the Saccharomyces cerevisiae proteins.
GO Category: 
CC

GO:0016817

hydrolase activity, acting on acid anhydrides

Details: 
Catalysis of the hydrolysis of any acid anhydride.
GO Category: 
MF

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