931 FG-GAP_2
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
931 chr_1 FG-GAP_2 190988 193544 - FG-GAP_2

Synonyms

NCBI ID Ensembl Genomes exon ID
7445032 Thaps931.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0379

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0078
 0.42

Most Highly Correlated Transcripts

bd258

(bd258) HU
0.9053

12899

AAA
0.8697

bd1221

(bd1221) recQ_fam
0.8633

bd1078

(bd1078) NA
0.8617

bd846

(bd846) NA
0.8541

bd624

(bd624) Glyco_transf_34 superfamily
0.8494

bd1092

(bd1092) NA
0.8386

bd719

(bd719) NA
0.8371

22851

hypothetical protein
0.8312

bd1214

(bd1214) KISc_C_terminal
0.8238

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
FG-GAP_2 superfamily FG-GAP repeat; FG-GAP repeat. - 72.5113 1.40E-15 624 - 673 superfamily 258488
FG-GAP_2 superfamily FG-GAP repeat; FG-GAP repeat. - 72.5113 1.40E-15 624 - 673 superfamily 258488

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0007155 GO:0007160 GO:0008305 -

GO:0007155

cell adhesion

Details: 
The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
GO Category: 
BP

GO:0007160

cell-matrix adhesion

Details: 
The binding of a cell to the extracellular matrix via adhesion molecules.
GO Category: 
BP

GO:0008305

integrin complex

Details: 
A protein complex that is composed of one alpha subunit and one beta subunit, both of which are members of the integrin superfamily of cell adhesion receptors; the complex spans the plasma membrane and binds to extracellular matrix ligands, cell-surface ligands, and soluble ligands.
GO Category: 
CC

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